Detailed information of SNP:
|
SNP ID:
sf0500820432(Gbrowse)
Chromosome: chr05 Position: 820432 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 72.55% | 27.45% |
| All Indica | 797 | 58.47% | 41.53% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 62.03% | 37.97% |
| Indica II | 212 | 53.30% | 46.70% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500820432 | C->G | INTERGENIC | None |