Detailed information of SNP:
|
SNP ID:
sf0500823835(Gbrowse)
Chromosome: chr05 Position: 823835 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 95.21% | 4.79% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500823835 | A->G | LOC_Os05g02435(LOC_Os05g02435.1) | UTR_3_PRIME |