Detailed information of SNP:
|
SNP ID:
sf0500824080(Gbrowse)
Chromosome: chr05 Position: 824080 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 51.08% | 48.92% |
| All Indica | 795 | 61.38% | 38.62% |
| All Japonica | 428 | 25.70% | 74.30% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 374 | 64.17% | 35.83% |
| Indica II | 210 | 56.67% | 43.33% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 285 | 11.23% | 88.77% |
| Tropical Japonica | 81 | 66.67% | 33.33% |
| Japonica Intermediate | 62 | 38.71% | 61.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500824080 | G->A | LOC_Os05g02435(LOC_Os05g02435.1) | UTR_3_PRIME |