Detailed information of SNP:
|
SNP ID:
sf0500829475(Gbrowse)
Chromosome: chr05 Position: 829475 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 97.35% | 2.65% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 439 | 92.26% | 7.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 310 | 99.35% | 0.65% |
| Tropical Japonica | 73 | 64.38% | 35.62% |
| Japonica Intermediate | 56 | 89.29% | 10.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500829475 | G->A | INTERGENIC | None |