Detailed information of SNP:
|
SNP ID:
sf0500831097(Gbrowse)
Chromosome: chr05 Position: 831097 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 93.44% | 6.56% |
| All Indica | 769 | 94.02% | 5.98% |
| All Japonica | 485 | 95.26% | 4.74% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 362 | 95.03% | 4.97% |
| Indica II | 202 | 93.07% | 6.93% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 326 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500831097 | C->T | INTERGENIC | None |