Detailed information of SNP:
|
SNP ID:
sf0500853889(Gbrowse)
Chromosome: chr05 Position: 853889 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.23% | 6.77% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500853889 | C->T | LOC_Os05g02490(LOC_Os05g02490.1) | INTRON |