Detailed information of SNP:
|
SNP ID:
sf0500854163(Gbrowse)
Chromosome: chr05 Position: 854163 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.38% | 6.62% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500854163 | T->A | LOC_Os05g02490(LOC_Os05g02490.1) | INTRON |