Detailed information of SNP:
|
SNP ID:
sf0500865630(Gbrowse)
Chromosome: chr05 Position: 865630 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.15% | 7.85% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 63 | 15.87% | 84.13% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500865630 | C->T | LOC_Os05g02510(LOC_Os05g02510.1) | Non-Synonymous SNP |