Detailed information of SNP:
|
SNP ID:
sf0500881560(Gbrowse)
Chromosome: chr05 Position: 881560 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.19% | 14.81% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 77.67% | 22.33% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 83.58% | 16.42% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500881560 | C->T | INTERGENIC | None |