Detailed information of SNP:
|
SNP ID:
sf0500885314(Gbrowse)
Chromosome: chr05 Position: 885314 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 60.89% | 39.11% |
| All Indica | 791 | 90.39% | 9.61% |
| All Japonica | 496 | 7.26% | 92.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 93.51% | 6.49% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500885314 | A->C | LOC_Os05g02550(LOC_Os05g02550.1) | INTRON |