Detailed information of SNP:
|
SNP ID:
sf0500913416(Gbrowse)
Chromosome: chr05 Position: 913416 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 96.40% | 3.60% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500913416 | A->C | LOC_Os05g02620(LOC_Os05g02620.1) | UTR_3_PRIME |