Detailed information of SNP:
|
SNP ID:
sf0500918459(Gbrowse)
Chromosome: chr05 Position: 918459 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 96.11% | 3.89% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500918459 | C->T | INTERGENIC | None |