Detailed information of SNP:
|
SNP ID:
sf0500936112(Gbrowse)
Chromosome: chr05 Position: 936112 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 91.75% | 8.25% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500936112 | G->A | INTERGENIC | None |