Detailed information of SNP:
|
SNP ID:
sf0500972405(Gbrowse)
Chromosome: chr05 Position: 972405 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.91% | 41.09% |
| All Indica | 799 | 38.42% | 61.58% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 30.93% | 69.07% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500972405 | C->T | INTERGENIC | None |