Detailed information of SNP:
|
SNP ID:
sf0501009805(Gbrowse)
Chromosome: chr05 Position: 1009805 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1145 | 97.64% | 2.36% |
| All Indica | 561 | 96.08% | 3.92% |
| All Japonica | 466 | 99.36% | 0.64% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 246 | 96.34% | 3.66% |
| Indica II | 164 | 96.34% | 3.66% |
| Indica Intermediate | 151 | 95.36% | 4.64% |
| Temperate Japonica | 326 | 99.69% | 0.31% |
| Tropical Japonica | 77 | 97.40% | 2.60% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501009805 | A->C | INTERGENIC | None |