Detailed information of SNP:
SNP ID:
sf0501018688(Gbrowse)
Chromosome: chr05 Position: 1018688 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 95.42% | 4.58% |
All Indica | 799 | 91.86% | 8.14% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 97.33% | 2.67% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 211 | 81.52% | 18.48% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0501018688 | C->A | INTERGENIC | None |