Detailed information of SNP:
|
SNP ID:
sf0501022834(Gbrowse)
Chromosome: chr05 Position: 1022834 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 53.32% | 46.68% |
| All Indica | 794 | 23.93% | 76.07% |
| All Japonica | 474 | 95.57% | 4.43% |
| Aus | 60 | 95.00% | 5.00% |
| Indica I | 374 | 6.68% | 93.32% |
| Indica II | 211 | 31.75% | 68.25% |
| Indica Intermediate | 209 | 46.89% | 53.11% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 79 | 91.14% | 8.86% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501022834 | C->T | INTERGENIC | None |