Detailed information of SNP:
|
SNP ID:
sf0501033496(Gbrowse)
Chromosome: chr05 Position: 1033496 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 95.45% | 4.55% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 486 | 86.83% | 13.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 86.36% | 13.64% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 62 | 72.58% | 27.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501033496 | G->T | LOC_Os05g02850(LOC_Os05g02850.1) | Non-Synonymous SNP |