Detailed information of SNP:
|
SNP ID:
sf0501035231(Gbrowse)
Chromosome: chr05 Position: 1035231 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501035231 | C->T | LOC_Os05g02860(LOC_Os05g02860.1) | INTRON |