Detailed information of SNP:
|
SNP ID:
sf0501038711(Gbrowse)
Chromosome: chr05 Position: 1038711 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 54.09% | 45.91% |
| All Indica | 756 | 27.51% | 72.49% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 63 | 25.40% | 74.60% |
| Indica I | 353 | 19.83% | 80.17% |
| Indica II | 205 | 30.24% | 69.76% |
| Indica Intermediate | 198 | 38.38% | 61.62% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501038711 | C->T | LOC_Os05g02860(LOC_Os05g02860.1) | SNPs that introduce stop codons |