Detailed information of SNP:
|
SNP ID:
sf0501094675(Gbrowse)
Chromosome: chr05 Position: 1094675 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1137 | 86.72% | 13.28% |
| All Indica | 543 | 73.48% | 26.52% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 56 | 98.21% | 1.79% |
| Indica I | 251 | 66.14% | 33.86% |
| Indica II | 143 | 79.72% | 20.28% |
| Indica Intermediate | 149 | 79.87% | 20.13% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 31 | 80.65% | 19.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501094675 | G->A | LOC_Os05g02950(LOC_Os05g02950.1) | INTRON |