Detailed information of SNP:
|
SNP ID:
sf0501096627(Gbrowse)
Chromosome: chr05 Position: 1096627 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 93.29% | 6.71% |
| All Indica | 785 | 89.68% | 10.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 82.54% | 17.46% |
| Indica I | 366 | 86.61% | 13.39% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501096627 | G->A | LOC_Os05g02950(LOC_Os05g02950.1) | Non-Synonymous SNP |