Detailed information of SNP:
|
SNP ID:
sf0501119832(Gbrowse)
Chromosome: chr05 Position: 1119832 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.92% | 11.08% |
| All Indica | 797 | 96.49% | 3.51% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501119832 | A->G | INTERGENIC | None |