Detailed information of SNP:
|
SNP ID:
sf0501121679(Gbrowse)
Chromosome: chr05 Position: 1121679 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 95.07% | 4.93% |
| All Indica | 773 | 93.27% | 6.73% |
| All Japonica | 484 | 97.11% | 2.89% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 96.76% | 3.24% |
| Indica II | 203 | 86.70% | 13.30% |
| Indica Intermediate | 200 | 93.50% | 6.50% |
| Temperate Japonica | 323 | 98.45% | 1.55% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501121679 | G->A | INTERGENIC | None |