Detailed information of SNP:
|
SNP ID:
sf0501156142(Gbrowse)
Chromosome: chr05 Position: 1156142 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 70.53% | 29.47% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 495 | 22.02% | 77.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 17.61% | 82.39% |
| Tropical Japonica | 92 | 28.26% | 71.74% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501156142 | C->T | LOC_Os05g03040(LOC_Os05g03040.3) | UTR_3_PRIME |
| sf0501156142 | C->T | LOC_Os05g03040(LOC_Os05g03040.2) | UTR_3_PRIME |
| sf0501156142 | C->T | LOC_Os05g03040(LOC_Os05g03040.1) | UTR_3_PRIME |