Detailed information of SNP:
|
SNP ID:
sf0501159312(Gbrowse)
Chromosome: chr05 Position: 1159312 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.44% | 16.56% |
| All Indica | 799 | 72.47% | 27.53% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501159312 | G->A | LOC_Os05g03040(LOC_Os05g03040.3) | Non-Synonymous SNP |
| sf0501159312 | G->A | LOC_Os05g03040(LOC_Os05g03040.2) | Non-Synonymous SNP |
| sf0501159312 | G->A | LOC_Os05g03040(LOC_Os05g03040.1) | Non-Synonymous SNP |