Detailed information of SNP:
|
SNP ID:
sf0501160809(Gbrowse)
Chromosome: chr05 Position: 1160809 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 53.68% | 46.32% |
| All Indica | 794 | 33.25% | 66.75% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 371 | 26.68% | 73.32% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501160809 | T->C | INTERGENIC | None |