Detailed information of SNP:
|
SNP ID:
sf0501178880(Gbrowse)
Chromosome: chr05 Position: 1178880 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 90.07% | 9.93% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 449 | 71.94% | 28.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 296 | 61.49% | 38.51% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501178880 | T->G | INTERGENIC | None |