Detailed information of SNP:
|
SNP ID:
sf0501179113(Gbrowse)
Chromosome: chr05 Position: 1179113 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 81.27% | 18.73% |
| All Indica | 795 | 76.35% | 23.65% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 72.53% | 27.47% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 208 | 75.00% | 25.00% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501179113 | G->A | INTERGENIC | None |