Detailed information of SNP:
|
SNP ID:
sf0501179144(Gbrowse)
Chromosome: chr05 Position: 1179144 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 84.96% | 15.04% |
| All Indica | 794 | 76.57% | 23.43% |
| All Japonica | 494 | 95.75% | 4.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 207 | 75.85% | 24.15% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501179144 | G->A | INTERGENIC | None |