Detailed information of SNP:
|
SNP ID:
sf0501181174(Gbrowse)
Chromosome: chr05 Position: 1181174 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 62.13% | 37.87% |
| All Indica | 794 | 35.77% | 64.23% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 373 | 31.10% | 68.90% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 208 | 40.38% | 59.62% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501181174 | A->T | INTERGENIC | None |