Detailed information of SNP:
|
SNP ID:
sf0501188048(Gbrowse)
Chromosome: chr05 Position: 1188048 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 94.36% | 5.64% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501188048 | C->G | LOC_Os05g03050(LOC_Os05g03050.1) | INTRON |