Detailed information of SNP:
|
SNP ID:
sf0501218807(Gbrowse)
Chromosome: chr05 Position: 1218807 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 71.66% | 28.34% |
| All Indica | 737 | 49.53% | 50.47% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 335 | 45.37% | 54.63% |
| Indica II | 202 | 58.91% | 41.09% |
| Indica Intermediate | 200 | 47.00% | 53.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501218807 | G->A | LOC_Os05g03090(LOC_Os05g03090.1) | Synonymous |