Detailed information of SNP:
|
SNP ID:
sf0501221909(Gbrowse)
Chromosome: chr05 Position: 1221909 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 93.07% | 6.93% |
| All Indica | 795 | 93.46% | 6.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501221909 | C->T | LOC_Os05g03090(LOC_Os05g03090.1) | Synonymous |