Detailed information of SNP:
|
SNP ID:
sf0501238176(Gbrowse)
Chromosome: chr05 Position: 1238176 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.73% | 48.27% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501238176 | C->G | INTERGENIC | None |