Detailed information of SNP:
|
SNP ID:
sf0501239989(Gbrowse)
Chromosome: chr05 Position: 1239989 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 92.67% | 7.33% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501239989 | G->T | INTERGENIC | None |