Detailed information of SNP:
|
SNP ID:
sf0501245516(Gbrowse)
Chromosome: chr05 Position: 1245516 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 60.54% | 39.46% |
| All Indica | 796 | 34.17% | 65.83% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 31.28% | 68.72% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 209 | 33.97% | 66.03% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501245516 | G->A | INTERGENIC | None |