Detailed information of SNP:
|
SNP ID:
sf0501245704(Gbrowse)
Chromosome: chr05 Position: 1245704 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 61.89% | 38.11% |
| All Indica | 771 | 95.59% | 4.41% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 359 | 97.21% | 2.79% |
| Indica II | 205 | 91.22% | 8.78% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501245704 | T->C | INTERGENIC | None |