Detailed information of SNP:
|
SNP ID:
sf0501314660(Gbrowse)
Chromosome: chr05 Position: 1314660 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 77.17% | 22.83% |
| All Indica | 796 | 77.51% | 22.49% |
| All Japonica | 497 | 82.29% | 17.71% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 374 | 74.60% | 25.40% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501314660 | C->T | LOC_Os05g03250(LOC_Os05g03250.1) | INTRON |