Detailed information of SNP:
|
SNP ID:
sf0501354516(Gbrowse)
Chromosome: chr05 Position: 1354516 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 77.59% | 22.41% |
| All Indica | 795 | 67.42% | 32.58% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 63 | 47.62% | 52.38% |
| Indica I | 372 | 67.74% | 32.26% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501354516 | C->T | LOC_Os05g03320(LOC_Os05g03320.1) | INTRON |