Detailed information of SNP:
|
SNP ID:
sf0501367920(Gbrowse)
Chromosome: chr05 Position: 1367920 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 55.34% | 44.66% |
| All Indica | 797 | 86.20% | 13.80% |
| All Japonica | 495 | 2.63% | 97.37% |
| Aus | 57 | 94.74% | 5.26% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 4.35% | 95.65% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501367920 | A->G | INTERGENIC | None |