Detailed information of SNP:
|
SNP ID:
sf0501368178(Gbrowse)
Chromosome: chr05 Position: 1368178 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 92.16% | 7.84% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501368178 | T->G | INTERGENIC | None |