Detailed information of SNP:
|
SNP ID:
sf0501379182(Gbrowse)
Chromosome: chr05 Position: 1379182 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 97.10% | 2.90% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 61 | 37.70% | 62.30% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501379182 | C->T | LOC_Os05g03360(LOC_Os05g03360.1) | Non-Synonymous SNP |