Detailed information of SNP:
|
SNP ID:
sf0501385910(Gbrowse)
Chromosome: chr05 Position: 1385910 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 66.38% | 33.62% |
| All Indica | 778 | 41.26% | 58.74% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 38.48% | 61.52% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 209 | 42.58% | 57.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501385910 | A->G | LOC_Os05g03370(LOC_Os05g03370.1) | INTRON |