Detailed information of SNP:
|
SNP ID:
sf0501390654(Gbrowse)
Chromosome: chr05 Position: 1390654 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 54.13% | 45.87% |
| All Indica | 681 | 18.80% | 81.20% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 52 | 80.77% | 19.23% |
| Indica I | 310 | 15.16% | 84.84% |
| Indica II | 192 | 21.88% | 78.12% |
| Indica Intermediate | 179 | 21.79% | 78.21% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501390654 | G->A | INTERGENIC | None |