Detailed information of SNP:
|
SNP ID:
sf0501421637(Gbrowse)
Chromosome: chr05 Position: 1421637 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 92.25% | 7.75% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501421637 | A->G | INTERGENIC | None |