Detailed information of SNP:
|
SNP ID:
sf0501424839(Gbrowse)
Chromosome: chr05 Position: 1424839 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.57% | 39.43% |
| All Indica | 798 | 91.48% | 8.52% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501424839 | C->A | INTERGENIC | None |