Detailed information of SNP:
|
SNP ID:
sf0501457095(Gbrowse)
Chromosome: chr05 Position: 1457095 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 94.71% | 5.29% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501457095 | T->A | LOC_Os05g03450(LOC_Os05g03450.1) | UTR_3_PRIME |