Detailed information of SNP:
|
SNP ID:
sf0501459494(Gbrowse)
Chromosome: chr05 Position: 1459494 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 77.68% | 22.32% |
| All Indica | 788 | 70.94% | 29.06% |
| All Japonica | 460 | 93.91% | 6.09% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 369 | 70.46% | 29.54% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 315 | 91.43% | 8.57% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501459494 | G->A | INTERGENIC | None |