Detailed information of SNP:
|
SNP ID:
sf0501460631(Gbrowse)
Chromosome: chr05 Position: 1460631 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.11% | 49.89% |
| All Indica | 799 | 20.03% | 79.97% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 6.93% | 93.07% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 14.22% | 85.78% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501460631 | G->A | INTERGENIC | None |